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p-value heatmap matrices  (GraphPad Software Inc)


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    Structured Review

    GraphPad Software Inc p-value heatmap matrices
    <t>Heatmap</t> of (A) phenotype control samples (n = 3 donors, each with n = 2 experimental replicates) and (B) cell-seeded scaffold macrophage samples (n = 1 donor, n = 3 experimental replicates per treatment per time point) with hierarchical clustering of genes and samples using the Euclidean distance metric and unweighted pair-group method with arithmetic mean clustering. Row-wise z-scores were used to normalize each gene across the sample space. The left dendrogram indicates clustering of genes and the top dendrogram indicates clustering of samples. Dendrograms are color coded according to gene set and sample group. Genes present within the dataset that are not part of either the M1 or M2a gene sets are denoted as “Other genes.” Color images are available online.
    P Value Heatmap Matrices, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/p-value heatmap matrices/product/GraphPad Software Inc
    Average 90 stars, based on 1 article reviews
    p-value heatmap matrices - by Bioz Stars, 2026-06
    90/100 stars

    Images

    1) Product Images from "Characterizing the Macrophage Response to Immunomodulatory Biomaterials Through Gene Set Analyses"

    Article Title: Characterizing the Macrophage Response to Immunomodulatory Biomaterials Through Gene Set Analyses

    Journal: Tissue Engineering. Part C, Methods

    doi: 10.1089/ten.tec.2019.0309

    Heatmap of (A) phenotype control samples (n = 3 donors, each with n = 2 experimental replicates) and (B) cell-seeded scaffold macrophage samples (n = 1 donor, n = 3 experimental replicates per treatment per time point) with hierarchical clustering of genes and samples using the Euclidean distance metric and unweighted pair-group method with arithmetic mean clustering. Row-wise z-scores were used to normalize each gene across the sample space. The left dendrogram indicates clustering of genes and the top dendrogram indicates clustering of samples. Dendrograms are color coded according to gene set and sample group. Genes present within the dataset that are not part of either the M1 or M2a gene sets are denoted as “Other genes.” Color images are available online.
    Figure Legend Snippet: Heatmap of (A) phenotype control samples (n = 3 donors, each with n = 2 experimental replicates) and (B) cell-seeded scaffold macrophage samples (n = 1 donor, n = 3 experimental replicates per treatment per time point) with hierarchical clustering of genes and samples using the Euclidean distance metric and unweighted pair-group method with arithmetic mean clustering. Row-wise z-scores were used to normalize each gene across the sample space. The left dendrogram indicates clustering of genes and the top dendrogram indicates clustering of samples. Dendrograms are color coded according to gene set and sample group. Genes present within the dataset that are not part of either the M1 or M2a gene sets are denoted as “Other genes.” Color images are available online.

    Techniques Used: Control



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    GraphPad Software Inc p-value heatmap matrices
    <t>Heatmap</t> of (A) phenotype control samples (n = 3 donors, each with n = 2 experimental replicates) and (B) cell-seeded scaffold macrophage samples (n = 1 donor, n = 3 experimental replicates per treatment per time point) with hierarchical clustering of genes and samples using the Euclidean distance metric and unweighted pair-group method with arithmetic mean clustering. Row-wise z-scores were used to normalize each gene across the sample space. The left dendrogram indicates clustering of genes and the top dendrogram indicates clustering of samples. Dendrograms are color coded according to gene set and sample group. Genes present within the dataset that are not part of either the M1 or M2a gene sets are denoted as “Other genes.” Color images are available online.
    P Value Heatmap Matrices, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/p-value heatmap matrices/product/GraphPad Software Inc
    Average 90 stars, based on 1 article reviews
    p-value heatmap matrices - by Bioz Stars, 2026-06
    90/100 stars
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    Heatmap of (A) phenotype control samples (n = 3 donors, each with n = 2 experimental replicates) and (B) cell-seeded scaffold macrophage samples (n = 1 donor, n = 3 experimental replicates per treatment per time point) with hierarchical clustering of genes and samples using the Euclidean distance metric and unweighted pair-group method with arithmetic mean clustering. Row-wise z-scores were used to normalize each gene across the sample space. The left dendrogram indicates clustering of genes and the top dendrogram indicates clustering of samples. Dendrograms are color coded according to gene set and sample group. Genes present within the dataset that are not part of either the M1 or M2a gene sets are denoted as “Other genes.” Color images are available online.

    Journal: Tissue Engineering. Part C, Methods

    Article Title: Characterizing the Macrophage Response to Immunomodulatory Biomaterials Through Gene Set Analyses

    doi: 10.1089/ten.tec.2019.0309

    Figure Lengend Snippet: Heatmap of (A) phenotype control samples (n = 3 donors, each with n = 2 experimental replicates) and (B) cell-seeded scaffold macrophage samples (n = 1 donor, n = 3 experimental replicates per treatment per time point) with hierarchical clustering of genes and samples using the Euclidean distance metric and unweighted pair-group method with arithmetic mean clustering. Row-wise z-scores were used to normalize each gene across the sample space. The left dendrogram indicates clustering of genes and the top dendrogram indicates clustering of samples. Dendrograms are color coded according to gene set and sample group. Genes present within the dataset that are not part of either the M1 or M2a gene sets are denoted as “Other genes.” Color images are available online.

    Article Snippet: To summarize our results, we generated p -value heatmap matrices using GraphPad Prism 8 to indicate which gene sets were significantly differentially expressed between sample groups and the direction of significance.

    Techniques: Control